We can create the ECDF with
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import numpy as np
from statsmodels.distributions.empirical_distribution import ECDF
ecdf = ECDF[[3, 3, 1, 4]]
and obtain then ECDF at point with
ecdf[x]
However, what if I want to know the x for percentile 97.5% ?
From //www.statsmodels.org/stable/generated/statsmodels.distributions.empirical_distribution.ECDF.html?highlight=ecdf
, it seems like not been implemented.
Is there any way to do this? Or any other libraries?
asked May 23, 2017 at 10:42
5
Since the empirical CDF just places mass of 1/n at each data point, the 97.5th quantile is just the data point that is bigger than 97.5% of all the other points. To find this value, you can simply sort the data in ascending order and find the 0.975n-th largest value.
sample = [1, 5, 2, 10, -19, 4, 7, 2, 0, -1]
n = len[sample]
sort = sorted[sample]
print sort[int[n * 0.975]]
Which produces:
10
Since we remember than for discrete distributions [like the empirical cdf], the quantile function is defined here , we realize that we have to take the 0.975n-th [rounded up] largest value.
MattR
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answered Aug 28, 2017 at 3:32
This is my suggestion. Linear interpolation because dfs are only effectively estimated from fairly large samples anyway. The interpolating line segments can be obtained because their endpoints occur at distinct values in the sample.
import statsmodels.distributions.empirical_distribution as edf
from scipy.interpolate import interp1d
import numpy as np
import matplotlib.pyplot as plt
sample = [1,4,2,6,5,5,3,3,5,7]
sample_edf = edf.ECDF[sample]
slope_changes = sorted[set[sample]]
sample_edf_values_at_slope_changes = [ sample_edf[item] for item in slope_changes]
inverted_edf = interp1d[sample_edf_values_at_slope_changes, slope_changes]
x = np.linspace[0.1, 1]
y = inverted_edf[x]
plt.plot[x, y, 'ro', x, y, 'b-']
plt.show[]
print ['97.5 percentile:', inverted_edf[0.975]]
It produces the following output,
97.5 percentile: 6.75
and this graph.
answered May 24, 2017 at 15:46
Bill BellBill Bell
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Python: inverse empirical cumulative distribution function [ECDF]?
Tags: python , numpy , statsmodels Answers: | Viewed 8,654 times
We can create the ECDF with
import numpy as np
from statsmodels.distributions.empirical_distribution import ECDF
ecdf = ECDF[[3, 3, 1, 4]]
and obtain then ECDF at point with
ecdf[x]
However, what if I want to know the x for percentile 97.5% ?
From //www.statsmodels.org/stable/generated/statsmodels.distributions.empirical_distribution.ECDF.html?highlight=ecdf
, it seems like not been implemented.
Is there any way to do this? Or any other libraries?
Some Code Answers
import numpy as np from statsmodels.distributions.empirical_distribution import ECDF ecdf = ECDF[[3, 3, 1, 4]]
sample = [1, 5, 2, 10, -19, 4, 7, 2, 0, -1] n = len[sample] sort = sorted[sample] print sort[int[n * 0.975]]
import statsmodels.distributions.empirical_distribution as edf from scipy.interpolate import interp1d import numpy as np import matplotlib.pyplot as plt sample = [1,4,2,6,5,5,3,3,5,7] sample_edf = edf.ECDF[sample] slope_changes = sorted[set[sample]] sample_edf_values_at_slope_changes = [ sample_edf[item] for item in slope_changes] inverted_edf = interp1d[sample_edf_values_at_slope_changes, slope_changes] x = np.linspace[0.1, 1] y = inverted_edf[x] plt.plot[x, y, 'ro', x, y, 'b-'] plt.show[] print ['97.5 percentile:', inverted_edf[0.975]]
How to Use an Empirical Distribution Function in Python
1 week ago An empirical distribution function can be fit for a data sample in Python. The statmodels Python library provides the ECDF classfor fitting an empirical cumulative distribution function and calculating the cumulative probabilities for specific observations from the domain. The distribution is fit by calling ECDF[] and passing in the raw data sample...
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28, 2019
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Python Empirical distribution function [ecdf] …
1 week ago Feb 20, 2014 · 7. I am aware of statsmodels.tools.tools.ECDF but since the calculation of an empricial cumulative distribution function [ECDF] is pretty straight-forward and I want to …
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Empirical cumulative distribution plots in Python
1 day ago Empirical cumulative distribution function plots are a way to visualize the distribution of a variable, and Plotly Express has a built-in function, px.ecdf [] to generate such plots. Plotly …
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Empirical Cumulative Distribution Function [ECDF] in Python
3 days ago Nov 23, 2019 · Plotting ECDF is really simple: Get length of the data [n_points] Generate array with consecutive y values. [Starts with 1/n_points and goes all the way up to 1] Sort the data. …
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How to Generate ECDF Plot using Python and R - Medium
1 week ago Jul 06, 2020 · The Empirical Cumulative Distribution Function [ECDF] plot will help you to visualize and calculate percentile values for decision making. In this article, we will use a …
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Calculate ECDF in Python | Codementor
1 week ago Feb 26, 2018 · Then the empirical distribution function is defined as:Source. Coming to my point, it is really hard to find an alternative for ecdf[] function of R in Python. There are few …
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Using an Empirical Distribution Function in Python
4 days ago Dec 08, 2019 · The statmodels Python library provides the ECDF class for fitting an empirical cumulative distribution function and calculating the cumulative probabilities for specific …
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› See also: Function Class
Empirical cumulative distribution function [ECDF] in Python
1 day ago Empirical cumulative distribution function [ECDF] in Python. What is an ECDF? import numpy as np import pandas as pd import seaborn as sns import matplotlib.pyplot as plt # …
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statsmodels.distributions.empirical_distribution.ECDF
1 week ago Return the Empirical CDF of an array as a step function. Parameters x array_like. Observations. side {‘left’, ‘right’}, optional. Default is ‘right’. Defines the shape of the intervals constituting the …
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